J7_5V8I_002

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

5V8I|1|2A|G|530, 5V8I|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|2A|A|8
5V8I|1|2A|U|9
5V8I|1|2A|G|10
5V8I|1|2A|G|11
5V8I|1|2A|U|12
5V8I|1|2A|A|13
5V8I|1|2A|A|14
5V8I|1|2A|G|15
*
5V8I|1|2A|U|525
5V8I|1|2A|A|526
5V8I|1|2A|C|527
5V8I|1|2A|A|528
5V8I|1|2A|A|529
5V8I|1|2A|G|530
5V8I|1|2A|C|531
*
5V8I|1|2A|G|2018
5V8I|1|2A|A|2019
5V8I|1|2A|A|2020
5V8I|1|2A|C|2021
5V8I|1|2A|U|2022
5V8I|1|2A|G|2023
*
5V8I|1|2A|C|2040
5V8I|1|2A|U|2041
5V8I|1|2A|A|2042
5V8I|1|2A|C|2043
*
5V8I|1|2A|G|2625
5V8I|1|2A|C|2626
5V8I|1|2A|G|2627
5V8I|1|2A|C|2628
5V8I|1|2A|A|2629
5V8I|1|2A|G|2630
*
5V8I|1|2A|C|2788
5V8I|1|2A|C|2789
*
5V8I|1|2A|G|2894
5V8I|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22