J7_5V8I_003

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

5V8I|1|2A|G|944, 5V8I|1|2A|A|945, 5V8I|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|2A|C|817
5V8I|1|2A|G|818
5V8I|1|2A|A|819
5V8I|1|2A|A|820
5V8I|1|2A|A|821
5V8I|1|2A|U|822
*
5V8I|1|2A|A|835
5V8I|1|2A|G|836
*
5V8I|1|2A|U|943
5V8I|1|2A|G|944
5V8I|1|2A|A|945
5V8I|1|2A|G|946
*
5V8I|1|2A|C|971
5V8I|1|2A|G|972
5V8I|1|2A|A|973
5V8I|1|2A|G|974
5V8I|1|2A|C|975
5V8I|1|2A|G|975|||A
5V8I|1|2A|C|976
*
5V8I|1|2A|G|987
5V8I|1|2A|A|988
5V8I|1|2A|G|989
5V8I|1|2A|A|990
5V8I|1|2A|C|991
*
5V8I|1|2A|G|1163
5V8I|1|2A|G|1164
*
5V8I|1|2A|C|1185
5V8I|1|2A|G|1186
5V8I|1|2A|G|1187
5V8I|1|2A|U|1188
5V8I|1|2A|A|1189
5V8I|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21