J7_5V93_001

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCGAAAUG*CAGC*GUGAGA*UCGAAAG*CAGAU*GC*GGGUAGG

Length

39 nucleotides

Bulged bases

5V93|1|A|A|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|A|C|945
5V93|1|A|C|946
5V93|1|A|G|947
5V93|1|A|A|948
5V93|1|A|A|949
5V93|1|A|A|950
5V93|1|A|U|951
5V93|1|A|G|952
*
5V93|1|A|C|963
5V93|1|A|A|964
5V93|1|A|G|965
5V93|1|A|C|966
*
5V93|1|A|G|1070
5V93|1|A|U|1071
5V93|1|A|G|1072
5V93|1|A|A|1073
5V93|1|A|G|1074
5V93|1|A|A|1075
*
5V93|1|A|U|1099
5V93|1|A|C|1100
5V93|1|A|G|1101
5V93|1|A|A|1102
5V93|1|A|A|1103
5V93|1|A|A|1104
5V93|1|A|G|1105
*
5V93|1|A|C|1116
5V93|1|A|A|1117
5V93|1|A|G|1118
5V93|1|A|A|1119
5V93|1|A|U|1120
*
5V93|1|A|G|1293
5V93|1|A|C|1294
*
5V93|1|A|G|1317
5V93|1|A|G|1318
5V93|1|A|G|1319
5V93|1|A|U|1320
5V93|1|A|A|1321
5V93|1|A|G|1322
5V93|1|A|G|1323

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

LSU ribosomal protein L21p

Chain W

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30