J7_5W4K_002

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

5W4K|1|2A|A|945, 5W4K|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5W4K|1|2A|C|817
5W4K|1|2A|G|818
5W4K|1|2A|A|819
5W4K|1|2A|A|820
5W4K|1|2A|A|821
5W4K|1|2A|U|822
*
5W4K|1|2A|A|835
5W4K|1|2A|G|836
*
5W4K|1|2A|U|943
5W4K|1|2A|G|944
5W4K|1|2A|A|945
5W4K|1|2A|G|946
*
5W4K|1|2A|C|971
5W4K|1|2A|G|972
5W4K|1|2A|A|973
5W4K|1|2A|G|974
5W4K|1|2A|C|975
5W4K|1|2A|G|975|||A
5W4K|1|2A|C|976
*
5W4K|1|2A|G|987
5W4K|1|2A|A|988
5W4K|1|2A|G|989
5W4K|1|2A|A|990
5W4K|1|2A|C|991
*
5W4K|1|2A|G|1163
5W4K|1|2A|G|1164
*
5W4K|1|2A|C|1185
5W4K|1|2A|G|1186
5W4K|1|2A|G|1187
5W4K|1|2A|U|1188
5W4K|1|2A|A|1189
5W4K|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21