J7_5WIS_002

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

5WIS|1|2A|A|945, 5WIS|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIS|1|2A|C|817
5WIS|1|2A|G|818
5WIS|1|2A|A|819
5WIS|1|2A|A|820
5WIS|1|2A|A|821
5WIS|1|2A|U|822
*
5WIS|1|2A|A|835
5WIS|1|2A|G|836
*
5WIS|1|2A|U|943
5WIS|1|2A|G|944
5WIS|1|2A|A|945
5WIS|1|2A|G|946
*
5WIS|1|2A|C|971
5WIS|1|2A|G|972
5WIS|1|2A|A|973
5WIS|1|2A|G|974
5WIS|1|2A|C|975
5WIS|1|2A|G|975|||A
5WIS|1|2A|C|976
*
5WIS|1|2A|G|987
5WIS|1|2A|A|988
5WIS|1|2A|G|989
5WIS|1|2A|A|990
5WIS|1|2A|C|991
*
5WIS|1|2A|G|1163
5WIS|1|2A|G|1164
*
5WIS|1|2A|C|1185
5WIS|1|2A|G|1186
5WIS|1|2A|G|1187
5WIS|1|2A|U|1188
5WIS|1|2A|A|1189
5WIS|1|2A|G|1190

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21