J7_5WIT_003

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

5WIT|1|2A|A|945, 5WIT|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|2A|C|817
5WIT|1|2A|G|818
5WIT|1|2A|A|819
5WIT|1|2A|A|820
5WIT|1|2A|A|821
5WIT|1|2A|U|822
*
5WIT|1|2A|A|835
5WIT|1|2A|G|836
*
5WIT|1|2A|U|943
5WIT|1|2A|G|944
5WIT|1|2A|A|945
5WIT|1|2A|G|946
*
5WIT|1|2A|C|971
5WIT|1|2A|G|972
5WIT|1|2A|A|973
5WIT|1|2A|G|974
5WIT|1|2A|C|975
5WIT|1|2A|G|975|||A
5WIT|1|2A|C|976
*
5WIT|1|2A|G|987
5WIT|1|2A|A|988
5WIT|1|2A|G|989
5WIT|1|2A|A|990
5WIT|1|2A|C|991
*
5WIT|1|2A|G|1163
5WIT|1|2A|G|1164
*
5WIT|1|2A|C|1185
5WIT|1|2A|G|1186
5WIT|1|2A|G|1187
5WIT|1|2A|U|1188
5WIT|1|2A|A|1189
5WIT|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21