J7_5XYM_001
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGAAAU*AG*UGGG*CGAGAG*CAGAU*GC*GGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 5XYM|1|A|G|1065
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5XYM|1|A|C|935
5XYM|1|A|G|936
5XYM|1|A|A|937
5XYM|1|A|A|938
5XYM|1|A|A|939
5XYM|1|A|U|940
*
5XYM|1|A|A|953
5XYM|1|A|G|954
*
5XYM|1|A|U|1063
5XYM|1|A|G|1064
5XYM|1|A|G|1065
5XYM|1|A|G|1066
*
5XYM|1|A|C|1092
5XYM|1|A|G|1093
5XYM|1|A|A|1094
5XYM|1|A|G|1095
5XYM|1|A|A|1096
5XYM|1|A|G|1097
*
5XYM|1|A|C|1108
5XYM|1|A|A|1109
5XYM|1|A|G|1110
5XYM|1|A|A|1111
5XYM|1|A|U|1112
*
5XYM|1|A|G|1285
5XYM|1|A|C|1286
*
5XYM|1|A|G|1303
5XYM|1|A|G|1304
5XYM|1|A|G|1305
5XYM|1|A|U|1306
5XYM|1|A|A|1307
5XYM|1|A|G|1308
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
- Chain a
- Uncharacterized protein bL37
Coloring options: