3D structure

PDB id
6BU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with S1 domains 1 and 2 (Class 1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6BU8|1|01|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6BU8|1|01|C|8
6BU8|1|01|G|9
6BU8|1|01|A|10
6BU8|1|01|C|11
6BU8|1|01|U|12
6BU8|1|01|A|13
6BU8|1|01|A|14
6BU8|1|01|G|15
*
6BU8|1|01|U|525
6BU8|1|01|A|526
6BU8|1|01|C|527
6BU8|1|01|A|528
6BU8|1|01|A|529
6BU8|1|01|G|530
6BU8|1|01|C|531
*
6BU8|1|01|G|2018
6BU8|1|01|A|2019
6BU8|1|01|A|2020
6BU8|1|01|C|2021
6BU8|1|01|U|2022
6BU8|1|01|C|2023
*
6BU8|1|01|G|2040
6BU8|1|01|U|2041
6BU8|1|01|A|2042
6BU8|1|01|C|2043
*
6BU8|1|01|G|2625
6BU8|1|01|C|2626
6BU8|1|01|G|2627
6BU8|1|01|C|2628
6BU8|1|01|U|2629
6BU8|1|01|G|2630
*
6BU8|1|01|C|2788
6BU8|1|01|C|2789
*
6BU8|1|01|G|2894
6BU8|1|01|G|2895

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 05
50S ribosomal protein L3
Chain 12
50S ribosomal protein L13
Chain 19
50S ribosomal protein L20
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32

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