J7_6C4I_001
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
- Length
- 35 nucleotides
- Bulged bases
- 6C4I|1|A|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6C4I|1|A|C|8
6C4I|1|A|G|9
6C4I|1|A|A|10
6C4I|1|A|C|11
6C4I|1|A|U|12
6C4I|1|A|A|13
6C4I|1|A|A|14
6C4I|1|A|G|15
*
6C4I|1|A|U|525
6C4I|1|A|A|526
6C4I|1|A|C|527
6C4I|1|A|A|528
6C4I|1|A|A|529
6C4I|1|A|G|530
6C4I|1|A|C|531
*
6C4I|1|A|G|2018
6C4I|1|A|A|2019
6C4I|1|A|A|2020
6C4I|1|A|C|2021
6C4I|1|A|U|2022
6C4I|1|A|C|2023
*
6C4I|1|A|G|2040
6C4I|1|A|U|2041
6C4I|1|A|A|2042
6C4I|1|A|C|2043
*
6C4I|1|A|G|2625
6C4I|1|A|C|2626
6C4I|1|A|G|2627
6C4I|1|A|C|2628
6C4I|1|A|U|2629
6C4I|1|A|G|2630
*
6C4I|1|A|C|2788
6C4I|1|A|C|2789
*
6C4I|1|A|G|2894
6C4I|1|A|G|2895
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L13
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
- Chain T
- 50S ribosomal protein L22
Coloring options: