J7_6C4I_002
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
- Length
- 36 nucleotides
- Bulged bases
- 6C4I|1|A|A|945
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6C4I|1|A|C|817
6C4I|1|A|G|818
6C4I|1|A|A|819
6C4I|1|A|A|820
6C4I|1|A|A|821
6C4I|1|A|G|822
*
6C4I|1|A|C|835
6C4I|1|A|G|836
6C4I|1|A|C|837
6C4I|1|A|C|838
*
6C4I|1|A|G|940
6C4I|1|A|A|941
6C4I|1|A|G|942
6C4I|1|A|A|943
6C4I|1|A|C|944
6C4I|1|A|A|945
6C4I|1|A|C|946
*
6C4I|1|A|G|971
6C4I|1|A|A|972
6C4I|1|A|A|973
6C4I|1|A|G|974
6C4I|1|A|A|975
6C4I|1|A|G|976
*
6C4I|1|A|C|987
6C4I|1|A|A|988
6C4I|1|A|G|989
6C4I|1|A|A|990
6C4I|1|A|C|991
*
6C4I|1|A|G|1163
6C4I|1|A|C|1164
*
6C4I|1|A|G|1185
6C4I|1|A|G|1186
6C4I|1|A|G|1187
6C4I|1|A|U|1188
6C4I|1|A|A|1189
6C4I|1|A|G|1190
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L30
- Chain 5
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
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