J7_6CAE_003

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

6CAE|1|2A|G|530, 6CAE|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CAE|1|2A|A|8
6CAE|1|2A|U|9
6CAE|1|2A|G|10
6CAE|1|2A|G|11
6CAE|1|2A|U|12
6CAE|1|2A|A|13
6CAE|1|2A|A|14
6CAE|1|2A|G|15
*
6CAE|1|2A|U|525
6CAE|1|2A|A|526
6CAE|1|2A|C|527
6CAE|1|2A|A|528
6CAE|1|2A|A|529
6CAE|1|2A|G|530
6CAE|1|2A|C|531
*
6CAE|1|2A|G|2018
6CAE|1|2A|A|2019
6CAE|1|2A|A|2020
6CAE|1|2A|C|2021
6CAE|1|2A|U|2022
6CAE|1|2A|G|2023
*
6CAE|1|2A|C|2040
6CAE|1|2A|U|2041
6CAE|1|2A|A|2042
6CAE|1|2A|C|2043
*
6CAE|1|2A|G|2625
6CAE|1|2A|C|2626
6CAE|1|2A|G|2627
6CAE|1|2A|C|2628
6CAE|1|2A|A|2629
6CAE|1|2A|G|2630
*
6CAE|1|2A|C|2788
6CAE|1|2A|C|2789
*
6CAE|1|2A|G|2894
6CAE|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22