J7_6CAE_004

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6CAE|1|2A|A|945, 6CAE|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CAE|1|2A|C|817
6CAE|1|2A|G|818
6CAE|1|2A|A|819
6CAE|1|2A|A|820
6CAE|1|2A|A|821
6CAE|1|2A|U|822
*
6CAE|1|2A|A|835
6CAE|1|2A|G|836
*
6CAE|1|2A|U|943
6CAE|1|2A|G|944
6CAE|1|2A|A|945
6CAE|1|2A|G|946
*
6CAE|1|2A|C|971
6CAE|1|2A|G|972
6CAE|1|2A|A|973
6CAE|1|2A|G|974
6CAE|1|2A|C|975
6CAE|1|2A|G|975|||A
6CAE|1|2A|C|976
*
6CAE|1|2A|G|987
6CAE|1|2A|A|988
6CAE|1|2A|G|989
6CAE|1|2A|A|990
6CAE|1|2A|C|991
*
6CAE|1|2A|G|1163
6CAE|1|2A|G|1164
*
6CAE|1|2A|C|1185
6CAE|1|2A|G|1186
6CAE|1|2A|G|1187
6CAE|1|2A|U|1188
6CAE|1|2A|A|1189
6CAE|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21