J7_6CFJ_003

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6CFJ|1|2A|A|945, 6CFJ|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFJ|1|2A|C|817
6CFJ|1|2A|G|818
6CFJ|1|2A|A|819
6CFJ|1|2A|A|820
6CFJ|1|2A|A|821
6CFJ|1|2A|U|822
*
6CFJ|1|2A|A|835
6CFJ|1|2A|G|836
*
6CFJ|1|2A|U|943
6CFJ|1|2A|G|944
6CFJ|1|2A|A|945
6CFJ|1|2A|G|946
*
6CFJ|1|2A|C|971
6CFJ|1|2A|G|972
6CFJ|1|2A|A|973
6CFJ|1|2A|G|974
6CFJ|1|2A|C|975
6CFJ|1|2A|G|975|||A
6CFJ|1|2A|C|976
*
6CFJ|1|2A|G|987
6CFJ|1|2A|A|988
6CFJ|1|2A|G|989
6CFJ|1|2A|A|990
6CFJ|1|2A|C|991
*
6CFJ|1|2A|G|1163
6CFJ|1|2A|G|1164
*
6CFJ|1|2A|C|1185
6CFJ|1|2A|G|1186
6CFJ|1|2A|G|1187
6CFJ|1|2A|U|1188
6CFJ|1|2A|A|1189
6CFJ|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21