J7_6CFK_003

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

6CFK|1|2A|G|530, 6CFK|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2A|A|8
6CFK|1|2A|U|9
6CFK|1|2A|G|10
6CFK|1|2A|G|11
6CFK|1|2A|U|12
6CFK|1|2A|A|13
6CFK|1|2A|A|14
6CFK|1|2A|G|15
*
6CFK|1|2A|U|525
6CFK|1|2A|A|526
6CFK|1|2A|C|527
6CFK|1|2A|A|528
6CFK|1|2A|A|529
6CFK|1|2A|G|530
6CFK|1|2A|C|531
*
6CFK|1|2A|G|2018
6CFK|1|2A|A|2019
6CFK|1|2A|A|2020
6CFK|1|2A|C|2021
6CFK|1|2A|U|2022
6CFK|1|2A|G|2023
*
6CFK|1|2A|C|2040
6CFK|1|2A|U|2041
6CFK|1|2A|A|2042
6CFK|1|2A|C|2043
*
6CFK|1|2A|G|2625
6CFK|1|2A|C|2626
6CFK|1|2A|G|2627
6CFK|1|2A|C|2628
6CFK|1|2A|A|2629
6CFK|1|2A|G|2630
*
6CFK|1|2A|C|2788
6CFK|1|2A|C|2789
*
6CFK|1|2A|G|2894
6CFK|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22