J7_6CFK_004

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6CFK|1|2A|A|945, 6CFK|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFK|1|2A|C|817
6CFK|1|2A|G|818
6CFK|1|2A|A|819
6CFK|1|2A|A|820
6CFK|1|2A|A|821
6CFK|1|2A|U|822
*
6CFK|1|2A|A|835
6CFK|1|2A|G|836
*
6CFK|1|2A|U|943
6CFK|1|2A|G|944
6CFK|1|2A|A|945
6CFK|1|2A|G|946
*
6CFK|1|2A|C|971
6CFK|1|2A|G|972
6CFK|1|2A|A|973
6CFK|1|2A|G|974
6CFK|1|2A|C|975
6CFK|1|2A|G|975|||A
6CFK|1|2A|C|976
*
6CFK|1|2A|G|987
6CFK|1|2A|A|988
6CFK|1|2A|G|989
6CFK|1|2A|A|990
6CFK|1|2A|C|991
*
6CFK|1|2A|G|1163
6CFK|1|2A|G|1164
*
6CFK|1|2A|C|1185
6CFK|1|2A|G|1186
6CFK|1|2A|G|1187
6CFK|1|2A|U|1188
6CFK|1|2A|A|1189
6CFK|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21