J7_6CFL_003

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

6CFL|1|2A|G|530, 6CFL|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2A|A|8
6CFL|1|2A|U|9
6CFL|1|2A|G|10
6CFL|1|2A|G|11
6CFL|1|2A|U|12
6CFL|1|2A|A|13
6CFL|1|2A|A|14
6CFL|1|2A|G|15
*
6CFL|1|2A|U|525
6CFL|1|2A|A|526
6CFL|1|2A|C|527
6CFL|1|2A|A|528
6CFL|1|2A|A|529
6CFL|1|2A|G|530
6CFL|1|2A|C|531
*
6CFL|1|2A|G|2018
6CFL|1|2A|A|2019
6CFL|1|2A|A|2020
6CFL|1|2A|C|2021
6CFL|1|2A|U|2022
6CFL|1|2A|G|2023
*
6CFL|1|2A|C|2040
6CFL|1|2A|U|2041
6CFL|1|2A|A|2042
6CFL|1|2A|C|2043
*
6CFL|1|2A|G|2625
6CFL|1|2A|C|2626
6CFL|1|2A|G|2627
6CFL|1|2A|C|2628
6CFL|1|2A|A|2629
6CFL|1|2A|G|2630
*
6CFL|1|2A|C|2788
6CFL|1|2A|C|2789
*
6CFL|1|2A|G|2894
6CFL|1|2A|U|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S Ribosomal Protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S Ribosomal Protein L20

Chain 2W

50S ribosomal protein L22