J7_6CFL_004

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6CFL|1|2A|A|945, 6CFL|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CFL|1|2A|C|817
6CFL|1|2A|G|818
6CFL|1|2A|A|819
6CFL|1|2A|A|820
6CFL|1|2A|A|821
6CFL|1|2A|U|822
*
6CFL|1|2A|A|835
6CFL|1|2A|G|836
*
6CFL|1|2A|U|943
6CFL|1|2A|G|944
6CFL|1|2A|A|945
6CFL|1|2A|G|946
*
6CFL|1|2A|C|971
6CFL|1|2A|G|972
6CFL|1|2A|A|973
6CFL|1|2A|G|974
6CFL|1|2A|C|975
6CFL|1|2A|G|975|||A
6CFL|1|2A|C|976
*
6CFL|1|2A|G|987
6CFL|1|2A|A|988
6CFL|1|2A|G|989
6CFL|1|2A|A|990
6CFL|1|2A|C|991
*
6CFL|1|2A|G|1163
6CFL|1|2A|G|1164
*
6CFL|1|2A|C|1185
6CFL|1|2A|G|1186
6CFL|1|2A|G|1187
6CFL|1|2A|U|1188
6CFL|1|2A|A|1189
6CFL|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S Ribosomal Protein L20

Chain 2V

50S ribosomal protein L21