J7_6CZR_002

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CGAAAUG*CAG*UGAG*CGAGCGCG*CGAGAC*GG*CGGUAG

Length

36 nucleotides

Bulged bases

6CZR|1|2A|A|989, 6CZR|1|2A|C|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6CZR|1|2A|C|863
6CZR|1|2A|G|864
6CZR|1|2A|A|865
6CZR|1|2A|A|866
6CZR|1|2A|A|867
6CZR|1|2A|U|868
6CZR|1|2A|G|869
*
6CZR|1|2A|C|880
6CZR|1|2A|A|881
6CZR|1|2A|G|882
*
6CZR|1|2A|U|987
6CZR|1|2A|G|988
6CZR|1|2A|A|989
6CZR|1|2A|G|990
*
6CZR|1|2A|C|1015
6CZR|1|2A|G|1016
6CZR|1|2A|A|1017
6CZR|1|2A|G|1018
6CZR|1|2A|C|1019
6CZR|1|2A|G|1020
6CZR|1|2A|C|1021
6CZR|1|2A|G|1022
*
6CZR|1|2A|C|1031
6CZR|1|2A|G|1032
6CZR|1|2A|A|1033
6CZR|1|2A|G|1034
6CZR|1|2A|A|1035
6CZR|1|2A|C|1036
*
6CZR|1|2A|G|1208
6CZR|1|2A|G|1209
*
6CZR|1|2A|C|1229
6CZR|1|2A|G|1230
6CZR|1|2A|G|1231
6CZR|1|2A|U|1232
6CZR|1|2A|A|1233
6CZR|1|2A|G|1234

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21