J7_6DDD_001
3D structure
- PDB id
- 6DDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAUUAAG*UACAAGU*AUAGUA*UUAC*GCGUAG*CC*GA
- Length
- 35 nucleotides
- Bulged bases
- 6DDD|1|1|G|575, 6DDD|1|1|G|2048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DDD|1|1|U|8
6DDD|1|1|U|9
6DDD|1|1|A|10
6DDD|1|1|U|11
6DDD|1|1|U|12
6DDD|1|1|A|13
6DDD|1|1|A|14
6DDD|1|1|G|15
*
6DDD|1|1|U|570
6DDD|1|1|A|571
6DDD|1|1|C|572
6DDD|1|1|A|573
6DDD|1|1|A|574
6DDD|1|1|G|575
6DDD|1|1|U|576
*
6DDD|1|1|A|2045
6DDD|1|1|U|2046
6DDD|1|1|A|2047
6DDD|1|1|G|2048
6DDD|1|1|U|2049
6DDD|1|1|A|2050
*
6DDD|1|1|U|2067
6DDD|1|1|U|2068
6DDD|1|1|A|2069
6DDD|1|1|C|2070
*
6DDD|1|1|G|2652
6DDD|1|1|C|2653
6DDD|1|1|G|2654
6DDD|1|1|U|2655
6DDD|1|1|A|2656
6DDD|1|1|G|2657
*
6DDD|1|1|C|2815
6DDD|1|1|C|2816
*
6DDD|1|1|G|2913
6DDD|1|1|A|2914
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L20
- Chain D
- 50S ribosomal protein L21
- Chain E
- 50S ribosomal protein L22
- Chain L
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L32
- Chain V
- 50S ribosomal protein L13
Coloring options: