J7_6DDG_001
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAAU*AG*UCAG*CGAAAG*CAGAC*GA*UGGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6DDG|1|1|A|989
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DDG|1|1|C|862
6DDG|1|1|G|863
6DDG|1|1|A|864
6DDG|1|1|A|865
6DDG|1|1|A|866
6DDG|1|1|U|867
*
6DDG|1|1|A|880
6DDG|1|1|G|881
*
6DDG|1|1|U|987
6DDG|1|1|C|988
6DDG|1|1|A|989
6DDG|1|1|G|990
*
6DDG|1|1|C|1015
6DDG|1|1|G|1016
6DDG|1|1|A|1017
6DDG|1|1|A|1018
6DDG|1|1|A|1019
6DDG|1|1|G|1020
*
6DDG|1|1|C|1031
6DDG|1|1|A|1032
6DDG|1|1|G|1033
6DDG|1|1|A|1034
6DDG|1|1|C|1035
*
6DDG|1|1|G|1207
6DDG|1|1|A|1208
*
6DDG|1|1|U|1224
6DDG|1|1|G|1225
6DDG|1|1|G|1226
6DDG|1|1|U|1227
6DDG|1|1|A|1228
6DDG|1|1|G|1229
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 2
- 5S ribosomal RNA; 5S rRNA
- Chain C
- 50S ribosomal protein L20
- Chain D
- 50S ribosomal protein L21
- Chain M
- 50S ribosomal protein L30
- Chain Q
- 50S ribosomal protein L35
- Chain X
- 50S ribosomal protein L15
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