J7_6EM1_001
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAAGUUU*AUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EM1|1|1|C|949
6EM1|1|1|G|950
6EM1|1|1|A|951
6EM1|1|1|A|952
6EM1|1|1|G|953
6EM1|1|1|U|954
6EM1|1|1|U|955
6EM1|1|1|U|956
*
6EM1|1|1|A|965
6EM1|1|1|U|966
6EM1|1|1|A|967
6EM1|1|1|G|968
*
6EM1|1|1|U|1114
6EM1|1|1|G|1115
6EM1|1|1|G|1116
6EM1|1|1|G|1117
*
6EM1|1|1|C|1141
6EM1|1|1|G|1142
6EM1|1|1|A|1143
6EM1|1|1|U|1144
6EM1|1|1|G|1145
6EM1|1|1|C|1146
*
6EM1|1|1|G|1157
6EM1|1|1|A|1158
6EM1|1|1|A|1159
6EM1|1|1|C|1160
6EM1|1|1|G|1161
*
6EM1|1|1|C|1338
6EM1|1|1|C|1339
*
6EM1|1|1|G|1365
6EM1|1|1|A|1366
6EM1|1|1|G|1367
6EM1|1|1|U|1368
6EM1|1|1|A|1369
6EM1|1|1|G|1370
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
Coloring options: