J7_6FKR_003

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

6FKR|1|2A|G|530, 6FKR|1|2A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FKR|1|2A|A|8
6FKR|1|2A|U|9
6FKR|1|2A|G|10
6FKR|1|2A|G|11
6FKR|1|2A|U|12
6FKR|1|2A|A|13
6FKR|1|2A|A|14
6FKR|1|2A|G|15
*
6FKR|1|2A|U|525
6FKR|1|2A|A|526
6FKR|1|2A|C|527
6FKR|1|2A|A|528
6FKR|1|2A|A|529
6FKR|1|2A|G|530
6FKR|1|2A|C|531
*
6FKR|1|2A|G|2018
6FKR|1|2A|A|2019
6FKR|1|2A|A|2020
6FKR|1|2A|C|2021
6FKR|1|2A|U|2022
6FKR|1|2A|G|2023
*
6FKR|1|2A|C|2040
6FKR|1|2A|U|2041
6FKR|1|2A|A|2042
6FKR|1|2A|C|2043
*
6FKR|1|2A|G|2625
6FKR|1|2A|C|2626
6FKR|1|2A|G|2627
6FKR|1|2A|C|2628
6FKR|1|2A|A|2629
6FKR|1|2A|G|2630
*
6FKR|1|2A|C|2788
6FKR|1|2A|C|2789
*
6FKR|1|2A|G|2894
6FKR|1|2A|U|2895

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22