J7_6FT6_002
3D structure
- PDB id
- 6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAGUUU*AUAG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 35 nucleotides
- Bulged bases
- 6FT6|1|1|G|1116, 6FT6|1|1|A|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FT6|1|1|C|949
6FT6|1|1|G|950
6FT6|1|1|A|951
6FT6|1|1|A|952
6FT6|1|1|G|953
6FT6|1|1|U|954
6FT6|1|1|U|955
6FT6|1|1|U|956
*
6FT6|1|1|A|965
6FT6|1|1|U|966
6FT6|1|1|A|967
6FT6|1|1|G|968
*
6FT6|1|1|U|1114
6FT6|1|1|G|1115
6FT6|1|1|G|1116
6FT6|1|1|G|1117
*
6FT6|1|1|C|1141
6FT6|1|1|G|1142
6FT6|1|1|A|1143
6FT6|1|1|U|1144
6FT6|1|1|G|1145
6FT6|1|1|C|1146
*
6FT6|1|1|G|1157
6FT6|1|1|A|1158
6FT6|1|1|A|1159
6FT6|1|1|C|1160
6FT6|1|1|G|1161
*
6FT6|1|1|C|1338
6FT6|1|1|C|1339
*
6FT6|1|1|G|1365
6FT6|1|1|A|1366
6FT6|1|1|G|1367
6FT6|1|1|U|1368
6FT6|1|1|A|1369
6FT6|1|1|G|1370
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain T
- 60S ribosomal protein L21-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
- Chain m
- Nucleolar GTP-binding protein 2
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