J7_6GBZ_001

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6GBZ|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GBZ|1|A|C|8
6GBZ|1|A|G|9
6GBZ|1|A|A|10
6GBZ|1|A|C|11
6GBZ|1|A|U|12
6GBZ|1|A|A|13
6GBZ|1|A|A|14
6GBZ|1|A|G|15
*
6GBZ|1|A|U|525
6GBZ|1|A|A|526
6GBZ|1|A|C|527
6GBZ|1|A|A|528
6GBZ|1|A|A|529
6GBZ|1|A|G|530
6GBZ|1|A|C|531
*
6GBZ|1|A|G|2018
6GBZ|1|A|A|2019
6GBZ|1|A|A|2020
6GBZ|1|A|C|2021
6GBZ|1|A|U|2022
6GBZ|1|A|C|2023
*
6GBZ|1|A|G|2040
6GBZ|1|A|U|2041
6GBZ|1|A|A|2042
6GBZ|1|A|C|2043
*
6GBZ|1|A|G|2625
6GBZ|1|A|C|2626
6GBZ|1|A|G|2627
6GBZ|1|A|C|2628
6GBZ|1|A|U|2629
6GBZ|1|A|G|2630
*
6GBZ|1|A|C|2788
6GBZ|1|A|C|2789
*
6GBZ|1|A|G|2894
6GBZ|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22