3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6GC4|1|A|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GC4|1|A|C|8
6GC4|1|A|G|9
6GC4|1|A|A|10
6GC4|1|A|C|11
6GC4|1|A|U|12
6GC4|1|A|A|13
6GC4|1|A|A|14
6GC4|1|A|G|15
*
6GC4|1|A|U|525
6GC4|1|A|A|526
6GC4|1|A|C|527
6GC4|1|A|A|528
6GC4|1|A|A|529
6GC4|1|A|G|530
6GC4|1|A|C|531
*
6GC4|1|A|G|2018
6GC4|1|A|A|2019
6GC4|1|A|A|2020
6GC4|1|A|C|2021
6GC4|1|A|U|2022
6GC4|1|A|C|2023
*
6GC4|1|A|G|2040
6GC4|1|A|U|2041
6GC4|1|A|A|2042
6GC4|1|A|C|2043
*
6GC4|1|A|G|2625
6GC4|1|A|C|2626
6GC4|1|A|G|2627
6GC4|1|A|C|2628
6GC4|1|A|U|2629
6GC4|1|A|G|2630
*
6GC4|1|A|C|2788
6GC4|1|A|C|2789
*
6GC4|1|A|G|2894
6GC4|1|A|G|2895

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22

Coloring options:

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