J7_6GC4_001

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6GC4|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC4|1|A|C|8
6GC4|1|A|G|9
6GC4|1|A|A|10
6GC4|1|A|C|11
6GC4|1|A|U|12
6GC4|1|A|A|13
6GC4|1|A|A|14
6GC4|1|A|G|15
*
6GC4|1|A|U|525
6GC4|1|A|A|526
6GC4|1|A|C|527
6GC4|1|A|A|528
6GC4|1|A|A|529
6GC4|1|A|G|530
6GC4|1|A|C|531
*
6GC4|1|A|G|2018
6GC4|1|A|A|2019
6GC4|1|A|A|2020
6GC4|1|A|C|2021
6GC4|1|A|U|2022
6GC4|1|A|C|2023
*
6GC4|1|A|G|2040
6GC4|1|A|U|2041
6GC4|1|A|A|2042
6GC4|1|A|C|2043
*
6GC4|1|A|G|2625
6GC4|1|A|C|2626
6GC4|1|A|G|2627
6GC4|1|A|C|2628
6GC4|1|A|U|2629
6GC4|1|A|G|2630
*
6GC4|1|A|C|2788
6GC4|1|A|C|2789
*
6GC4|1|A|G|2894
6GC4|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22