3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
6GC4|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GC4|1|A|C|817
6GC4|1|A|G|818
6GC4|1|A|A|819
6GC4|1|A|A|820
6GC4|1|A|A|821
6GC4|1|A|G|822
*
6GC4|1|A|C|835
6GC4|1|A|G|836
6GC4|1|A|C|837
6GC4|1|A|C|838
*
6GC4|1|A|G|940
6GC4|1|A|A|941
6GC4|1|A|G|942
6GC4|1|A|A|943
6GC4|1|A|C|944
6GC4|1|A|A|945
6GC4|1|A|C|946
*
6GC4|1|A|G|971
6GC4|1|A|A|972
6GC4|1|A|A|973
6GC4|1|A|G|974
6GC4|1|A|A|975
6GC4|1|A|G|976
*
6GC4|1|A|C|987
6GC4|1|A|A|988
6GC4|1|A|G|989
6GC4|1|A|A|990
6GC4|1|A|C|991
*
6GC4|1|A|G|1163
6GC4|1|A|C|1164
*
6GC4|1|A|G|1185
6GC4|1|A|G|1186
6GC4|1|A|G|1187
6GC4|1|A|U|1188
6GC4|1|A|A|1189
6GC4|1|A|G|1190

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:

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