J7_6GQ1_001
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CGAAGU*AGC*GUGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 33 nucleotides
- Bulged bases
- 6GQ1|1|1|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQ1|1|1|C|949
6GQ1|1|1|G|950
6GQ1|1|1|A|951
6GQ1|1|1|A|952
6GQ1|1|1|G|953
6GQ1|1|1|U|954
*
6GQ1|1|1|A|967
6GQ1|1|1|G|968
6GQ1|1|1|C|969
*
6GQ1|1|1|G|1113
6GQ1|1|1|U|1114
6GQ1|1|1|G|1115
6GQ1|1|1|G|1116
6GQ1|1|1|G|1117
*
6GQ1|1|1|C|1141
6GQ1|1|1|G|1142
6GQ1|1|1|A|1143
6GQ1|1|1|U|1144
6GQ1|1|1|G|1145
6GQ1|1|1|C|1146
*
6GQ1|1|1|G|1157
6GQ1|1|1|A|1158
6GQ1|1|1|A|1159
6GQ1|1|1|C|1160
6GQ1|1|1|G|1161
*
6GQ1|1|1|C|1338
6GQ1|1|1|C|1339
*
6GQ1|1|1|G|1365
6GQ1|1|1|A|1366
6GQ1|1|1|G|1367
6GQ1|1|1|U|1368
6GQ1|1|1|A|1369
6GQ1|1|1|G|1370
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L29
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
Coloring options: