J7_6GXO_001

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6GXO|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXO|1|A|C|8
6GXO|1|A|G|9
6GXO|1|A|A|10
6GXO|1|A|C|11
6GXO|1|A|U|12
6GXO|1|A|A|13
6GXO|1|A|A|14
6GXO|1|A|G|15
*
6GXO|1|A|U|525
6GXO|1|A|A|526
6GXO|1|A|C|527
6GXO|1|A|A|528
6GXO|1|A|A|529
6GXO|1|A|G|530
6GXO|1|A|C|531
*
6GXO|1|A|G|2018
6GXO|1|A|A|2019
6GXO|1|A|A|2020
6GXO|1|A|C|2021
6GXO|1|A|U|2022
6GXO|1|A|C|2023
*
6GXO|1|A|G|2040
6GXO|1|A|U|2041
6GXO|1|A|A|2042
6GXO|1|A|C|2043
*
6GXO|1|A|G|2625
6GXO|1|A|C|2626
6GXO|1|A|G|2627
6GXO|1|A|C|2628
6GXO|1|A|U|2629
6GXO|1|A|G|2630
*
6GXO|1|A|C|2788
6GXO|1|A|C|2789
*
6GXO|1|A|G|2894
6GXO|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22