J7_6GXP_001

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG

Length

35 nucleotides

Bulged bases

6GXP|1|A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXP|1|A|C|8
6GXP|1|A|G|9
6GXP|1|A|A|10
6GXP|1|A|C|11
6GXP|1|A|U|12
6GXP|1|A|A|13
6GXP|1|A|A|14
6GXP|1|A|G|15
*
6GXP|1|A|U|525
6GXP|1|A|A|526
6GXP|1|A|C|527
6GXP|1|A|A|528
6GXP|1|A|A|529
6GXP|1|A|G|530
6GXP|1|A|C|531
*
6GXP|1|A|G|2018
6GXP|1|A|A|2019
6GXP|1|A|A|2020
6GXP|1|A|C|2021
6GXP|1|A|U|2022
6GXP|1|A|C|2023
*
6GXP|1|A|G|2040
6GXP|1|A|U|2041
6GXP|1|A|A|2042
6GXP|1|A|C|2043
*
6GXP|1|A|G|2625
6GXP|1|A|C|2626
6GXP|1|A|G|2627
6GXP|1|A|C|2628
6GXP|1|A|U|2629
6GXP|1|A|G|2630
*
6GXP|1|A|C|2788
6GXP|1|A|C|2789
*
6GXP|1|A|G|2894
6GXP|1|A|G|2895

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22