J7_6LSS_001

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAAGU*AG*UGGGC*GCGCU(OMG)C*GAACG*CC*GAGUAG

Length

33 nucleotides

Bulged bases

6LSS|1|2|G|1854

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|C|1666
6LSS|1|2|G|1667
6LSS|1|2|A|1668
6LSS|1|2|A|1669
6LSS|1|2|G|1670
6LSS|1|2|U|1671
*
6LSS|1|2|A|1684
6LSS|1|2|G|1685
*
6LSS|1|2|U|1852
6LSS|1|2|G|1853
6LSS|1|2|G|1854
6LSS|1|2|G|1855
6LSS|1|2|C|1856
*
6LSS|1|2|G|1878
6LSS|1|2|C|1879
6LSS|1|2|G|1880
6LSS|1|2|C|1881
6LSS|1|2|U|1882
6LSS|1|2|OMG|1883
6LSS|1|2|C|1884
*
6LSS|1|2|G|1895
6LSS|1|2|A|1896
6LSS|1|2|A|1897
6LSS|1|2|C|1898
6LSS|1|2|G|1899
*
6LSS|1|2|C|2077
6LSS|1|2|C|2078
*
6LSS|1|2|G|2278
6LSS|1|2|A|2279
6LSS|1|2|G|2280
6LSS|1|2|U|2281
6LSS|1|2|A|2282
6LSS|1|2|G|2283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a

Chain p

60S ribosomal protein L7