J7_6LU8_001

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CGAAGU*AG*UGGGC*GCGCU(OMG)C*GAACG*CC*GAGUAG

Length

33 nucleotides

Bulged bases

6LU8|1|2|G|1854

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LU8|1|2|C|1666
6LU8|1|2|G|1667
6LU8|1|2|A|1668
6LU8|1|2|A|1669
6LU8|1|2|G|1670
6LU8|1|2|U|1671
*
6LU8|1|2|A|1684
6LU8|1|2|G|1685
*
6LU8|1|2|U|1852
6LU8|1|2|G|1853
6LU8|1|2|G|1854
6LU8|1|2|G|1855
6LU8|1|2|C|1856
*
6LU8|1|2|G|1878
6LU8|1|2|C|1879
6LU8|1|2|G|1880
6LU8|1|2|C|1881
6LU8|1|2|U|1882
6LU8|1|2|OMG|1883
6LU8|1|2|C|1884
*
6LU8|1|2|G|1895
6LU8|1|2|A|1896
6LU8|1|2|A|1897
6LU8|1|2|C|1898
6LU8|1|2|G|1899
*
6LU8|1|2|C|2077
6LU8|1|2|C|2078
*
6LU8|1|2|G|2278
6LU8|1|2|A|2279
6LU8|1|2|G|2280
6LU8|1|2|U|2281
6LU8|1|2|A|2282
6LU8|1|2|G|2283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a

Chain p

60S ribosomal protein L7