J7_6N8M_001
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAGU*AG*UGGG*CGAUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6N8M|1|A|G|1116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8M|1|A|C|949
6N8M|1|A|G|950
6N8M|1|A|A|951
6N8M|1|A|A|952
6N8M|1|A|G|953
6N8M|1|A|U|954
*
6N8M|1|A|A|967
6N8M|1|A|G|968
*
6N8M|1|A|U|1114
6N8M|1|A|G|1115
6N8M|1|A|G|1116
6N8M|1|A|G|1117
*
6N8M|1|A|C|1141
6N8M|1|A|G|1142
6N8M|1|A|A|1143
6N8M|1|A|U|1144
6N8M|1|A|G|1145
6N8M|1|A|C|1146
*
6N8M|1|A|G|1157
6N8M|1|A|A|1158
6N8M|1|A|A|1159
6N8M|1|A|C|1160
6N8M|1|A|G|1161
*
6N8M|1|A|C|1338
6N8M|1|A|C|1339
*
6N8M|1|A|G|1365
6N8M|1|A|A|1366
6N8M|1|A|G|1367
6N8M|1|A|U|1368
6N8M|1|A|A|1369
6N8M|1|A|G|1370
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L4-A
- Chain I
- 60S ribosomal protein L7-A
- Chain N
- 60S ribosomal protein L13-A
- Chain d
- 60S ribosomal protein L18-A
- Chain g
- 60S ribosomal protein L21-A
- Chain n
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L29
- Chain r
- 60S ribosomal protein L32
- Chain s
- 60S ribosomal protein L33-A
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