J7_6N9E_002

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGCG*CGAGAC*GG*CGGUAG

Length

34 nucleotides

Bulged bases

6N9E|1|2A|A|945, 6N9E|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N9E|1|2A|C|817
6N9E|1|2A|G|818
6N9E|1|2A|A|819
6N9E|1|2A|A|820
6N9E|1|2A|A|821
6N9E|1|2A|U|822
*
6N9E|1|2A|A|835
6N9E|1|2A|G|836
*
6N9E|1|2A|U|943
6N9E|1|2A|G|944
6N9E|1|2A|A|945
6N9E|1|2A|G|946
*
6N9E|1|2A|C|971
6N9E|1|2A|G|972
6N9E|1|2A|A|973
6N9E|1|2A|G|974
6N9E|1|2A|C|975
6N9E|1|2A|G|975|||A
6N9E|1|2A|C|976
6N9E|1|2A|G|977
*
6N9E|1|2A|C|986
6N9E|1|2A|G|987
6N9E|1|2A|A|988
6N9E|1|2A|G|989
6N9E|1|2A|A|990
6N9E|1|2A|C|991
*
6N9E|1|2A|G|1163
6N9E|1|2A|G|1164
*
6N9E|1|2A|C|1185
6N9E|1|2A|G|1186
6N9E|1|2A|G|1187
6N9E|1|2A|U|1188
6N9E|1|2A|A|1189
6N9E|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S Ribosomal Protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S Ribosomal Protein L15

Chain 2U

50S Ribosomal Protein L20

Chain 2V

50S Ribosomal Protein L21