J7_6ND5_001

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU

Length

35 nucleotides

Bulged bases

6ND5|1|1A|G|530, 6ND5|1|1A|C|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|1A|A|8
6ND5|1|1A|U|9
6ND5|1|1A|G|10
6ND5|1|1A|G|11
6ND5|1|1A|U|12
6ND5|1|1A|A|13
6ND5|1|1A|A|14
6ND5|1|1A|G|15
*
6ND5|1|1A|U|525
6ND5|1|1A|A|526
6ND5|1|1A|C|527
6ND5|1|1A|A|528
6ND5|1|1A|A|529
6ND5|1|1A|G|530
6ND5|1|1A|C|531
*
6ND5|1|1A|G|2018
6ND5|1|1A|A|2019
6ND5|1|1A|A|2020
6ND5|1|1A|C|2021
6ND5|1|1A|U|2022
6ND5|1|1A|G|2023
*
6ND5|1|1A|C|2040
6ND5|1|1A|U|2041
6ND5|1|1A|A|2042
6ND5|1|1A|C|2043
*
6ND5|1|1A|G|2625
6ND5|1|1A|C|2626
6ND5|1|1A|G|2627
6ND5|1|1A|C|2628
6ND5|1|1A|A|2629
6ND5|1|1A|G|2630
*
6ND5|1|1A|C|2788
6ND5|1|1A|C|2789
*
6ND5|1|1A|G|2894
6ND5|1|1A|U|2895

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22