J7_6ND5_003

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6ND5|1|2A|A|945, 6ND5|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|2A|C|817
6ND5|1|2A|G|818
6ND5|1|2A|A|819
6ND5|1|2A|A|820
6ND5|1|2A|A|821
6ND5|1|2A|U|822
*
6ND5|1|2A|A|835
6ND5|1|2A|G|836
*
6ND5|1|2A|U|943
6ND5|1|2A|G|944
6ND5|1|2A|A|945
6ND5|1|2A|G|946
*
6ND5|1|2A|C|971
6ND5|1|2A|G|972
6ND5|1|2A|A|973
6ND5|1|2A|G|974
6ND5|1|2A|C|975
6ND5|1|2A|G|975|||A
6ND5|1|2A|C|976
*
6ND5|1|2A|G|987
6ND5|1|2A|A|988
6ND5|1|2A|G|989
6ND5|1|2A|A|990
6ND5|1|2A|C|991
*
6ND5|1|2A|G|1163
6ND5|1|2A|G|1164
*
6ND5|1|2A|C|1185
6ND5|1|2A|G|1186
6ND5|1|2A|G|1187
6ND5|1|2A|U|1188
6ND5|1|2A|A|1189
6ND5|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21