J7_6O97_003

3D structure

PDB id

6O97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG

Length

32 nucleotides

Bulged bases

6O97|1|2A|A|945, 6O97|1|2A|C|975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O97|1|2A|C|817
6O97|1|2A|G|818
6O97|1|2A|A|819
6O97|1|2A|A|820
6O97|1|2A|A|821
6O97|1|2A|U|822
*
6O97|1|2A|A|835
6O97|1|2A|G|836
*
6O97|1|2A|U|943
6O97|1|2A|G|944
6O97|1|2A|A|945
6O97|1|2A|G|946
*
6O97|1|2A|C|971
6O97|1|2A|G|972
6O97|1|2A|A|973
6O97|1|2A|G|974
6O97|1|2A|C|975
6O97|1|2A|G|975|||A
6O97|1|2A|C|976
*
6O97|1|2A|G|987
6O97|1|2A|A|988
6O97|1|2A|G|989
6O97|1|2A|A|990
6O97|1|2A|C|991
*
6O97|1|2A|G|1163
6O97|1|2A|G|1164
*
6O97|1|2A|C|1185
6O97|1|2A|G|1186
6O97|1|2A|G|1187
6O97|1|2A|U|1188
6O97|1|2A|A|1189
6O97|1|2A|G|1190

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L30

Chain 28

50S ribosomal protein L35

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2P

50S ribosomal protein L15

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21