3D structure

PDB id
6O9J (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Elongation Competent Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
6O9J|1|B|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6O9J|1|B|C|817
6O9J|1|B|G|818
6O9J|1|B|A|819
6O9J|1|B|A|820
6O9J|1|B|A|821
6O9J|1|B|G|822
*
6O9J|1|B|C|835
6O9J|1|B|G|836
6O9J|1|B|C|837
*
6O9J|1|B|G|942
6O9J|1|B|A|943
6O9J|1|B|C|944
6O9J|1|B|A|945
6O9J|1|B|C|946
*
6O9J|1|B|G|971
6O9J|1|B|A|972
6O9J|1|B|A|973
6O9J|1|B|G|974
6O9J|1|B|A|975
6O9J|1|B|G|976
*
6O9J|1|B|C|987
6O9J|1|B|A|988
6O9J|1|B|G|989
6O9J|1|B|A|990
6O9J|1|B|C|991
*
6O9J|1|B|G|1163
6O9J|1|B|C|1164
*
6O9J|1|B|G|1185
6O9J|1|B|G|1186
6O9J|1|B|G|1187
6O9J|1|B|U|1188
6O9J|1|B|A|1189
6O9J|1|B|G|1190

Current chains

Chain B
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L35
Chain A
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Y
50S ribosomal protein L30

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1627 s