3D structure

PDB id
6O9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
6O9K|1|A|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6O9K|1|A|C|817
6O9K|1|A|G|818
6O9K|1|A|A|819
6O9K|1|A|A|820
6O9K|1|A|A|821
6O9K|1|A|G|822
*
6O9K|1|A|C|835
6O9K|1|A|G|836
6O9K|1|A|C|837
*
6O9K|1|A|G|942
6O9K|1|A|A|943
6O9K|1|A|C|944
6O9K|1|A|A|945
6O9K|1|A|C|946
*
6O9K|1|A|G|971
6O9K|1|A|A|972
6O9K|1|A|A|973
6O9K|1|A|G|974
6O9K|1|A|A|975
6O9K|1|A|G|976
*
6O9K|1|A|C|987
6O9K|1|A|A|988
6O9K|1|A|G|989
6O9K|1|A|A|990
6O9K|1|A|C|991
*
6O9K|1|A|G|1163
6O9K|1|A|C|1164
*
6O9K|1|A|G|1185
6O9K|1|A|G|1186
6O9K|1|A|G|1187
6O9K|1|A|U|1188
6O9K|1|A|A|1189
6O9K|1|A|G|1190

Current chains

Chain A
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L30
Chain 8
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain X
5S ribosomal RNA; 5S rRNA

Coloring options:

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