3D structure

PDB id
6OG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6OG7|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OG7|1|1|C|8
6OG7|1|1|G|9
6OG7|1|1|A|10
6OG7|1|1|C|11
6OG7|1|1|U|12
6OG7|1|1|A|13
6OG7|1|1|A|14
6OG7|1|1|G|15
*
6OG7|1|1|U|525
6OG7|1|1|A|526
6OG7|1|1|C|527
6OG7|1|1|A|528
6OG7|1|1|A|529
6OG7|1|1|G|530
6OG7|1|1|C|531
*
6OG7|1|1|G|2018
6OG7|1|1|A|2019
6OG7|1|1|A|2020
6OG7|1|1|C|2021
6OG7|1|1|U|2022
6OG7|1|1|C|2023
*
6OG7|1|1|G|2040
6OG7|1|1|U|2041
6OG7|1|1|A|2042
6OG7|1|1|C|2043
*
6OG7|1|1|G|2625
6OG7|1|1|C|2626
6OG7|1|1|G|2627
6OG7|1|1|C|2628
6OG7|1|1|U|2629
6OG7|1|1|G|2630
*
6OG7|1|1|C|2788
6OG7|1|1|C|2789
*
6OG7|1|1|G|2894
6OG7|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22

Coloring options:

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