3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGACUAAG*UACAAGC*GAACUC*GUAC*GCGCUG*CC*GG
Length
35 nucleotides
Bulged bases
6OGF|1|1|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGF|1|1|C|8
6OGF|1|1|G|9
6OGF|1|1|A|10
6OGF|1|1|C|11
6OGF|1|1|U|12
6OGF|1|1|A|13
6OGF|1|1|A|14
6OGF|1|1|G|15
*
6OGF|1|1|U|525
6OGF|1|1|A|526
6OGF|1|1|C|527
6OGF|1|1|A|528
6OGF|1|1|A|529
6OGF|1|1|G|530
6OGF|1|1|C|531
*
6OGF|1|1|G|2018
6OGF|1|1|A|2019
6OGF|1|1|A|2020
6OGF|1|1|C|2021
6OGF|1|1|U|2022
6OGF|1|1|C|2023
*
6OGF|1|1|G|2040
6OGF|1|1|U|2041
6OGF|1|1|A|2042
6OGF|1|1|C|2043
*
6OGF|1|1|G|2625
6OGF|1|1|C|2626
6OGF|1|1|G|2627
6OGF|1|1|C|2628
6OGF|1|1|U|2629
6OGF|1|1|G|2630
*
6OGF|1|1|C|2788
6OGF|1|1|C|2789
*
6OGF|1|1|G|2894
6OGF|1|1|G|2895

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain s
50S ribosomal protein L22

Coloring options:

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