3D structure

PDB id
6OGF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
36 nucleotides
Bulged bases
6OGF|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OGF|1|1|C|817
6OGF|1|1|G|818
6OGF|1|1|A|819
6OGF|1|1|A|820
6OGF|1|1|A|821
6OGF|1|1|G|822
*
6OGF|1|1|C|835
6OGF|1|1|G|836
6OGF|1|1|C|837
6OGF|1|1|C|838
*
6OGF|1|1|G|940
6OGF|1|1|A|941
6OGF|1|1|G|942
6OGF|1|1|A|943
6OGF|1|1|C|944
6OGF|1|1|A|945
6OGF|1|1|C|946
*
6OGF|1|1|G|971
6OGF|1|1|A|972
6OGF|1|1|A|973
6OGF|1|1|G|974
6OGF|1|1|A|975
6OGF|1|1|G|976
*
6OGF|1|1|C|987
6OGF|1|1|A|988
6OGF|1|1|G|989
6OGF|1|1|A|990
6OGF|1|1|C|991
*
6OGF|1|1|G|1163
6OGF|1|1|C|1164
*
6OGF|1|1|G|1185
6OGF|1|1|G|1186
6OGF|1|1|G|1187
6OGF|1|1|U|1188
6OGF|1|1|A|1189
6OGF|1|1|G|1190

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain E
50S ribosomal protein L35
Chain l
50S ribosomal protein L15
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21
Chain z
50S ribosomal protein L30

Coloring options:

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