3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length
35 nucleotides
Bulged bases
6OJ2|1|RA|G|530, 6OJ2|1|RA|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OJ2|1|RA|A|8
6OJ2|1|RA|U|9
6OJ2|1|RA|G|10
6OJ2|1|RA|G|11
6OJ2|1|RA|U|12
6OJ2|1|RA|A|13
6OJ2|1|RA|A|14
6OJ2|1|RA|G|15
*
6OJ2|1|RA|U|525
6OJ2|1|RA|A|526
6OJ2|1|RA|C|527
6OJ2|1|RA|A|528
6OJ2|1|RA|A|529
6OJ2|1|RA|G|530
6OJ2|1|RA|C|531
*
6OJ2|1|RA|G|2018
6OJ2|1|RA|A|2019
6OJ2|1|RA|A|2020
6OJ2|1|RA|C|2021
6OJ2|1|RA|U|2022
6OJ2|1|RA|G|2023
*
6OJ2|1|RA|C|2040
6OJ2|1|RA|U|2041
6OJ2|1|RA|A|2042
6OJ2|1|RA|C|2043
*
6OJ2|1|RA|G|2625
6OJ2|1|RA|C|2626
6OJ2|1|RA|G|2627
6OJ2|1|RA|C|2628
6OJ2|1|RA|A|2629
6OJ2|1|RA|G|2630
*
6OJ2|1|RA|C|2788
6OJ2|1|RA|C|2789
*
6OJ2|1|RA|G|2894
6OJ2|1|RA|U|2895

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RN
50S ribosomal protein L13
Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22

Coloring options:

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