J7_6OM0_001

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG

Length

31 nucleotides

Bulged bases

6OM0|1|t|G|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OM0|1|t|C|1648
6OM0|1|t|G|1649
6OM0|1|t|A|1650
6OM0|1|t|A|1651
6OM0|1|t|G|1652
6OM0|1|t|U|1653
*
6OM0|1|t|A|1666
6OM0|1|t|G|1667
*
6OM0|1|t|U|1833
6OM0|1|t|G|1834
6OM0|1|t|G|1835
6OM0|1|t|G|1836
*
6OM0|1|t|C|1860
6OM0|1|t|G|1861
6OM0|1|t|C|1862
6OM0|1|t|U|1863
6OM0|1|t|G|1864
6OM0|1|t|C|1865
*
6OM0|1|t|G|1876
6OM0|1|t|A|1877
6OM0|1|t|A|1878
6OM0|1|t|C|1879
6OM0|1|t|G|1880
*
6OM0|1|t|C|2058
6OM0|1|t|C|2059
*
6OM0|1|t|G|2257
6OM0|1|t|A|2258
6OM0|1|t|G|2259
6OM0|1|t|U|2260
6OM0|1|t|A|2261
6OM0|1|t|G|2262

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

5S ribosomal RNA; 5S rRNA

Chain H

60S ribosomal protein L7

Chain M

60S ribosomal protein L13

Chain R

60S ribosomal protein L18

Chain U

60S ribosomal protein L21

Chain b

60S ribosomal protein L27a

Chain c

60S ribosomal protein L29

Chain f

60S ribosomal protein L32

Chain g

60S ribosomal protein L35a