3D structure

PDB id
6OM6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAAAG*CGC*GACAC*GAAGAG*CAGAC*GC*GGGUAG
Length
33 nucleotides
Bulged bases
6OM6|1|1|A|945
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OM6|1|1|C|817
6OM6|1|1|G|818
6OM6|1|1|A|819
6OM6|1|1|A|820
6OM6|1|1|A|821
6OM6|1|1|G|822
*
6OM6|1|1|C|835
6OM6|1|1|G|836
6OM6|1|1|C|837
*
6OM6|1|1|G|942
6OM6|1|1|A|943
6OM6|1|1|C|944
6OM6|1|1|A|945
6OM6|1|1|C|946
*
6OM6|1|1|G|971
6OM6|1|1|A|972
6OM6|1|1|A|973
6OM6|1|1|G|974
6OM6|1|1|A|975
6OM6|1|1|G|976
*
6OM6|1|1|C|987
6OM6|1|1|A|988
6OM6|1|1|G|989
6OM6|1|1|A|990
6OM6|1|1|C|991
*
6OM6|1|1|G|1163
6OM6|1|1|C|1164
*
6OM6|1|1|G|1185
6OM6|1|1|G|1186
6OM6|1|1|G|1187
6OM6|1|1|U|1188
6OM6|1|1|A|1189
6OM6|1|1|G|1190

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30
Chain e
50S ribosomal protein L35

Coloring options:

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