3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
Length
35 nucleotides
Bulged bases
6ORD|1|RA|G|530, 6ORD|1|RA|C|2021
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ORD|1|RA|A|8
6ORD|1|RA|U|9
6ORD|1|RA|G|10
6ORD|1|RA|G|11
6ORD|1|RA|U|12
6ORD|1|RA|A|13
6ORD|1|RA|A|14
6ORD|1|RA|G|15
*
6ORD|1|RA|U|525
6ORD|1|RA|A|526
6ORD|1|RA|C|527
6ORD|1|RA|A|528
6ORD|1|RA|A|529
6ORD|1|RA|G|530
6ORD|1|RA|C|531
*
6ORD|1|RA|G|2018
6ORD|1|RA|A|2019
6ORD|1|RA|A|2020
6ORD|1|RA|C|2021
6ORD|1|RA|U|2022
6ORD|1|RA|G|2023
*
6ORD|1|RA|C|2040
6ORD|1|RA|U|2041
6ORD|1|RA|A|2042
6ORD|1|RA|C|2043
*
6ORD|1|RA|G|2625
6ORD|1|RA|C|2626
6ORD|1|RA|G|2627
6ORD|1|RA|C|2628
6ORD|1|RA|A|2629
6ORD|1|RA|G|2630
*
6ORD|1|RA|C|2788
6ORD|1|RA|C|2789
*
6ORD|1|RA|G|2894
6ORD|1|RA|U|2895

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RN
50S ribosomal protein L13
Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22

Coloring options:

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