J7_6OTR_003
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- AUGGUAAG*UACAAGC*GAACUG*CUAC*GCGCAG*CC*GU
- Length
- 35 nucleotides
- Bulged bases
- 6OTR|1|YA|G|530, 6OTR|1|YA|C|2021
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OTR|1|YA|A|8
6OTR|1|YA|U|9
6OTR|1|YA|G|10
6OTR|1|YA|G|11
6OTR|1|YA|U|12
6OTR|1|YA|A|13
6OTR|1|YA|A|14
6OTR|1|YA|G|15
*
6OTR|1|YA|U|525
6OTR|1|YA|A|526
6OTR|1|YA|C|527
6OTR|1|YA|A|528
6OTR|1|YA|A|529
6OTR|1|YA|G|530
6OTR|1|YA|C|531
*
6OTR|1|YA|G|2018
6OTR|1|YA|A|2019
6OTR|1|YA|A|2020
6OTR|1|YA|C|2021
6OTR|1|YA|U|2022
6OTR|1|YA|G|2023
*
6OTR|1|YA|C|2040
6OTR|1|YA|U|2041
6OTR|1|YA|A|2042
6OTR|1|YA|C|2043
*
6OTR|1|YA|G|2625
6OTR|1|YA|C|2626
6OTR|1|YA|G|2627
6OTR|1|YA|C|2628
6OTR|1|YA|A|2629
6OTR|1|YA|G|2630
*
6OTR|1|YA|C|2788
6OTR|1|YA|C|2789
*
6OTR|1|YA|G|2894
6OTR|1|YA|U|2895
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YE
- 50S ribosomal protein L3
- Chain YN
- 50S ribosomal protein L13
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
Coloring options: