J7_6OTR_004
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGAAAU*AG*UGAG*CGAGCGC*GAGAC*GG*CGGUAG
- Length
- 32 nucleotides
- Bulged bases
- 6OTR|1|YA|A|945, 6OTR|1|YA|C|974|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6OTR|1|YA|C|817
6OTR|1|YA|G|818
6OTR|1|YA|A|819
6OTR|1|YA|A|820
6OTR|1|YA|A|821
6OTR|1|YA|U|822
*
6OTR|1|YA|A|835
6OTR|1|YA|G|836
*
6OTR|1|YA|U|943
6OTR|1|YA|G|944
6OTR|1|YA|A|945
6OTR|1|YA|G|946
*
6OTR|1|YA|C|971
6OTR|1|YA|G|972
6OTR|1|YA|A|973
6OTR|1|YA|G|974
6OTR|1|YA|C|974|||A
6OTR|1|YA|G|975
6OTR|1|YA|C|976
*
6OTR|1|YA|G|987
6OTR|1|YA|A|988
6OTR|1|YA|G|989
6OTR|1|YA|A|990
6OTR|1|YA|C|991
*
6OTR|1|YA|G|1163
6OTR|1|YA|G|1164
*
6OTR|1|YA|C|1185
6OTR|1|YA|G|1186
6OTR|1|YA|G|1187
6OTR|1|YA|U|1188
6OTR|1|YA|A|1189
6OTR|1|YA|G|1190
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y3
- 50S ribosomal protein L30
- Chain Y8
- 50S ribosomal protein L35
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YP
- 50S ribosomal protein L15
- Chain YU
- 50S ribosomal protein L20
- Chain YV
- 50S ribosomal protein L21
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