J7_6P5I_001
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
- Length
- 31 nucleotides
- Bulged bases
- 6P5I|1|5|G|1854
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5I|1|5|C|1666
6P5I|1|5|A|1667
6P5I|1|5|A|1668
6P5I|1|5|A|1669
6P5I|1|5|G|1670
6P5I|1|5|U|1671
*
6P5I|1|5|A|1684
6P5I|1|5|G|1685
*
6P5I|1|5|U|1852
6P5I|1|5|G|1853
6P5I|1|5|G|1854
6P5I|1|5|G|1855
*
6P5I|1|5|C|1879
6P5I|1|5|G|1880
6P5I|1|5|C|1881
6P5I|1|5|U|1882
6P5I|1|5|G|1883
6P5I|1|5|C|1884
*
6P5I|1|5|G|1895
6P5I|1|5|A|1896
6P5I|1|5|A|1897
6P5I|1|5|C|1898
6P5I|1|5|G|1899
*
6P5I|1|5|C|2077
6P5I|1|5|C|2078
*
6P5I|1|5|G|2278
6P5I|1|5|A|2279
6P5I|1|5|G|2280
6P5I|1|5|U|2281
6P5I|1|5|A|2282
6P5I|1|5|G|2283
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain AC
- uL4
- Chain AF
- uL30
- Chain AL
- eL13
- Chain AQ
- eL18
- Chain AT
- eL21
- Chain Aa
- uL15
- Chain Ab
- eL29
- Chain Ae
- eL32
- Chain Af
- eL33
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