3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAAGU*AG*UGGG*CGCUGC*GAACG*CC*GAGUAG
Length
31 nucleotides
Bulged bases
6P5N|1|5|G|1854
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5N|1|5|C|1666
6P5N|1|5|A|1667
6P5N|1|5|A|1668
6P5N|1|5|A|1669
6P5N|1|5|G|1670
6P5N|1|5|U|1671
*
6P5N|1|5|A|1684
6P5N|1|5|G|1685
*
6P5N|1|5|U|1852
6P5N|1|5|G|1853
6P5N|1|5|G|1854
6P5N|1|5|G|1855
*
6P5N|1|5|C|1879
6P5N|1|5|G|1880
6P5N|1|5|C|1881
6P5N|1|5|U|1882
6P5N|1|5|G|1883
6P5N|1|5|C|1884
*
6P5N|1|5|G|1895
6P5N|1|5|A|1896
6P5N|1|5|A|1897
6P5N|1|5|C|1898
6P5N|1|5|G|1899
*
6P5N|1|5|C|2077
6P5N|1|5|C|2078
*
6P5N|1|5|G|2278
6P5N|1|5|A|2279
6P5N|1|5|G|2280
6P5N|1|5|U|2281
6P5N|1|5|A|2282
6P5N|1|5|G|2283

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain AC
uL4
Chain AF
L30
Chain AL
eL13
Chain AQ
eL18
Chain AT
eL21
Chain Aa
uL15
Chain Ab
eL29
Chain Ae
eL32
Chain Af
eL33

Coloring options:

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