J7_6PC5_002

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAAG*CGCC*GAGACAC*GAAGAG*CAGAC*GC*GGGUAG

Length

36 nucleotides

Bulged bases

6PC5|1|I|A|945

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC5|1|I|C|817
6PC5|1|I|G|818
6PC5|1|I|A|819
6PC5|1|I|A|820
6PC5|1|I|A|821
6PC5|1|I|G|822
*
6PC5|1|I|C|835
6PC5|1|I|G|836
6PC5|1|I|C|837
6PC5|1|I|C|838
*
6PC5|1|I|G|940
6PC5|1|I|A|941
6PC5|1|I|G|942
6PC5|1|I|A|943
6PC5|1|I|C|944
6PC5|1|I|A|945
6PC5|1|I|C|946
*
6PC5|1|I|G|971
6PC5|1|I|A|972
6PC5|1|I|A|973
6PC5|1|I|G|974
6PC5|1|I|A|975
6PC5|1|I|G|976
*
6PC5|1|I|C|987
6PC5|1|I|A|988
6PC5|1|I|G|989
6PC5|1|I|A|990
6PC5|1|I|C|991
*
6PC5|1|I|G|1163
6PC5|1|I|C|1164
*
6PC5|1|I|G|1185
6PC5|1|I|G|1186
6PC5|1|I|G|1187
6PC5|1|I|U|1188
6PC5|1|I|A|1189
6PC5|1|I|G|1190

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L15